PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g07920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 112aa    MW: 12589.3 Da    PI: 5.9188
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g07920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB154.42e-4817104289
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                     +eqd++lPianv+r+mk++lP+nakisk+aket+qecvsefisfvtseas+kc++e+rkt+n+dd++walatlGf+dy++p++ y  +
  Vang09g07920.1  17 KEQDQLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNADDICWALATLGFDDYAAPMRRYQIQ 104
                     89*********************************************************************************99665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-4511101IPR009072Histone-fold
SuperFamilySSF471134.19E-3419105IPR009072Histone-fold
PfamPF008089.8E-282286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-145068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-146987No hitNo description
PRINTSPR006152.3E-1488106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEDSFGGSSS KDKCSIKEQD QLLPIANVGR LMKQILPQNA KISKEAKETM QECVSEFISF  60
VTSEASEKCR KERRKTVNAD DICWALATLG FDDYAAPMRR YQIQHSPLIQ E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-3916101186Transcription factor HapC (Eurofung)
4g92_B6e-3916101186Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-166AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498966.13e-70PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-50NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0L9TBC06e-71A0A0L9TBC0_PHAAN; Uncharacterized protein
STRINGGLYMA09G05150.23e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.19e-52nuclear factor Y, subunit B5